Publications (2019)

1. International Journal Articles
 * Corresponding Author, Contribute equally, bolded = ICBS authors
  1. Middeldorp CM., Felix JF., Mahajan A., Horikoshi M., Robertson NR., Beaumont RN., Bradfield JP., Bustamante M., Cousminer DL., Day FR., De Silva NM., Guxens M., Mook-Kanamori DO., St Pourcain B., Warrington NM., Adair LS., Ahlqvist E., Ahluwali TS., Almgren P., Ang W., Atalay M., Auvinen J., Bartels M., Beckmann JS., Bilbao JR., Bond T., Borja JB., Cavadino A., Charoen P., Chen Z., Coin L., Cooper C., Curtin JA., Custovic A., Das S., Davies GE., Dedoussis GV., Duijts L., Eastwood PR., Eliasen AU., Elliott P., Eriksson JG., Estivill X., Fadista J., Fedko IO., Frayling TM., Gaillard R., Gauderman WJ., Geller F., Gilliland F., Gilsanz V., Granell R., Grarup N., Groop L., Hadley D., Hakonarson H., Hansen T., Hartman CA., Hattersley AT., Hayes MG., Hebebrand J., Heinrich J., Helgeland Ø., Henders AK., Henderson J., Henrikson TB., Hirschhorn JN., Hivert M-F., Hocher B., Holloway JW., Holt P., Hottenga J-J., Hyppönen E., Iñíguez C., Johansson S., Jugessur A., Kähönen M., Kalkwarf HJ., Kaprio J., Karhunen V., Kemp JP., Kerkhof M., Koppelman GH., Körner A., Kotecha S., Kreiner-Møller E., Kulohoma B., Kumar A., Kutalik Z., Lahti J., Lappe JM., Larsson H., Lehtimäki T., Lewin AM., Li J., Lichtenstein P., Lindgren CM., Lindi V., Linneberg A., Liu X., Liu J., Lowe Jr WL., Lundström S., Lyytikäinen L-P., Ma RCW., Macé A., Mägi R., Magnus P., Mamun AA., Mannikko M., Martin NG., Mbarek H., McCarthy NS., Medland SE., Melbye M., Melén E., Mohlke KL., Monnereau C., Morgen CS., Morris AP., Murray JC., Myhre R., Najman JM., Nivard MG., Nohr EA., Nolte IM., Ntalla I., O’Reilly P., Oberfield SE., Oken E., Oldehinkel AJ., Pahkala K., Palviainen T., Panoutsopoulou K., Pedersen O., Pennell CE., Pershagen G., Pitkänen N., Plomin R., Power C., Prasad RB., Prokopenko I., Pulkkinen L., Räikkönen K., Raitakari OT., Reynolds RM., Richmond RC., Rivadeneira F., Rodriguez A., Rose RJ., Salem R., Santa-Marina L., Saw S-M., Schnurr TM., Scott JG., Selzam S., Shepherd JA., Simpson A., Skotte L., Sleiman PMA., Snieder H., Sørensen TIA., Standl M., Steegers EAP., Strachan DP., Straker L., Strandberg T., Taylor M., Teo Y-Y., Thiering E., Torrent M., Tyrrell J., Uitterlinden AG., van Beijsterveldt T., van der Most PJ., van Duijn CM., Viikari J., Vilor-Tejedor N., Vogelezang S., Vonk JM., Vrijkotte TGM., Vuoksimaa E., Wang CA., Watkins WJ., Wichmann H-E., Willemsen G., Williams GM., Wilson JFW., Wray NR., Xu S., Xu C-J., Yaghootkar H., Yi L., Zafarmand MH., Zeggini E., Zemel BS., Hinney A., Lakka TA., Whitehouse AJO., Sunyer J., Widén EE., Feenstra B., Sebert S., Jacobsson B., Njølstad PR., Stoltenberg C., Davey-Smith G., Lawlor DA., Paternoster L., Timpson NJ., Ong KK., Bisgaard H., Bønnelykke K., Jaddoe VWV., Tiemeier H., Järvelin M-R., Evans DM., Perry JRB., Grant SFA., Boomsma DI., Freathy RM., McCarthy MI., The Early Growth Genetics (EGG) and EArly Genetics and Lifecourse Epidemiology (EAGLE) Consortia: design, results and future prospectsEUROPEAN JOURNAL OF EPIDEMIOLOGY, doi: 10.1007/s10654-019-00502-9. Jan 2019. (Impact factor = 6.529)
  2. Bunbanjerdsuk S., Vorasan N., Saethang T., Pongrujikorn T., Pangpunyakulchai D., Mongkonsiri N., Arsa L., Thokanit N., Pongsapich W., Anekpuritanang T., Ngamphaiboon N., Jinawath A., Sunpaweravong S., Pisitkun T.,Suktitipat B., Jinawath N.*, Oncoproteomic and gene expression analyses identify prognostic biomarkers for second primary malignancy in patients with head and neck squamous cell carcinoma. Mod Pathol. doi: 10.1038/s41379-019-0211-2. Feb 2019. (Impact factor = 6.655)
  3. Niyomnaitham S., Parinyanitikul N, Roothumnong E., Jinda W., Samarnthai N., Atikankul T., Suktitipat B., Thongnoppakhun W., Limwongse C., Pithukpakorn M., Tumor mutational profile of triple negative breast cancer patients in Thailand revealed distinctive genetic alteration in chromatin remodeling gene. PeerJ, Biochemistry, Biophysics and Molecular Biology, PubMed 30828495, doi: 10.7717/peerj.6501. Feb 2019. (Impact factor = 2.35)
  4. Tsai FJ., Lai MT., Cheng J., Chao SC., Korla PK., Chen HJ., Lin CM., Tsai MH., Hua CH., Jan CI., Jinawath N., Wu CC., Chen CM., Kuo BY., Chen LW., Yang J., Hwang T., Sheu JJ., Novel K6-K14 Keratin Fusion Enhances Cancer Stemness and Aggressiveness in Oral Squamous Cell Carcinoma. Oncogene, doi:10.1038/s41388-019-0781-y. Mar 2019. (Impact factor = 6.634)
  5. Sonthiphand P., Ruangroengkulrith S., Mhuantong W., Charoensawan V., Chotpantarat S., Boonkaewwan S., Metagenomic insights into microbial diversity in a groundwater basin impacted by a variety of anthropogenic activitiesEnviron Sci Pollut Res Int. 2019 Jul 12. doi: 10.1007/s11356-019-05905-5. PMID: 31300992., Jul 2019. (Impact factor = 2.914)
  6. Rojnueangnit K., Charalsawadi C., Thammachote W., Pradabmuksiri A., Tim‐Aroon T., Novelli A., Loddo S., Briuglia S., M S., Concetta C., Wattanasirichaigoon D., Jinawath N.*, Clinical delineation of 18q11‐q12 microdeletion: Intellectual disability, speech and behavioral disorders, and conotruncal heart defectsMol Genet Genomic Med.
    2019 Sep;7(9):e896. doi: 10.1002/mgg3.896. (Impact factor = 2.448)
  7. Udom N., Chansongkrow P., Charoensawan V., Auesukaree C., Coordination of the Cell Wall Integrity and High-Osmolarity Glycerol Pathways in Response to Ethanol Stress in Saccharomyces cerevisiae. Appl Environ Microbiol. 2019 Jul 18;85(15). pii: e00551-19. doi: 10.1128/AEM.00551-19. PMID: 31101611., Aug 2019. (Impact factor = 4.077) 
  8. Thi Vo T, Poovorawan K, Charoen P., Soonthornworasiri N, Nontprasert A,Kittitrakul C, Phumratanaprapin W, Tangkijvanich P.Association between Hepatitis B Surface Antigen Levels and the Risk of Hepatocellular Carcinoma in Patients with Chronic Hepatitis B Infection: Systematic Review and Meta-Analysis., Asian Pac J Cancer Prev. 2019 Aug 1;20(8):2239-2246. doi: 10.31557/APJCP.2019.20.8.2239., Aug 2019. ( RG 2017 impact factor = 1.53)
  9. Charoen P.*, Eu-ahsunthornwattana J., Thongmung N., Jose PA., Sritara P., Vathesatogkit P., Kitiyakara C. The contribution of four polymorphisms in renin-angiotensin-aldosterone-related genes in hypertension in a Thai population., DOI: 10.1155/2019/4861081, International Journal of Hypertension, Aug 2019. (Impact factor = 1.865) 
  10. Rojnueangnit K., Charalsawadi C., Thammachote W., Pradabmuksiri A., Tim‐Aroon T., Novelli A., Loddo S., Briuglia S., M S., Concetta C., Wattanasirichaigoon D., Jinawath N.*, Clinical delineation of 18q11‐q12 microdeletion: Intellectual disability, speech and behavioral disorders, and conotruncal heart defectsMol Genet Genomic Med. 2019 Sep;7(9):e896. doi: 10.1002/mgg3.896. (Impact factor = 2.448)., Sep 2019.
  11. Sunpaweravong S., Bunbanjerdsuk S., Pongrujikorn T., Naktang C., Sunpaweravong P., Nitiruangjaras A., Dechaphankul T.,  Jinawath N*.Clonal relationship of synchronous head and neck cancer and esophageal cancer assessed by single nucleotide polymorphism-based loss of heterozygosity analysis. doi:10.1186/s12885-019-6394-6, BMC Cancer. 2019 Dec 3;19(1):1174. Dec 2019. (5-year impact factor = 3.424)
  12. Pairoj S., Damrongsak P., Damrongsak B., Jinawath N., Kaewkhaw R., Leelawattananon T., Ruttanasirawit C., Locharoenrat K., Antiradical properties of chemo drug, carboplatin, in cooperation with ZnO nanoparticles under UV irradiation in putative model of cancer cells. Biocybernetics and Biomedical Engineering Volume 39, Issue 3, Pages 893-901, Sep 2019. (Impact factor = 2.159)
  13. Lao-On U, Rojvirat P, Chansongkrow P, Phannasil P, Siritutsoontorn S, Charoensawan V., Jitrapakdee S. c-Myc directly targets an over-expression of pyruvate carboxylase in highly invasive breast cancer. Biochim Biophys Acta Mol Basis Dis. 2019 Dec 23;1866(3):165656. doi: 10.1016/j.bbadis.2019.165656 (Impact factor = 4.328) Dec 2019.

 

2. International Proceedings 

  1. Srithiowat N., Tanramluk D.Structure-based drug design approaches to improve Gleevec as promiscuous drug., Proceeding of Pure and Applied Chemistry International Conference (PACCON 2019), Bangkok, Thailand (pp. CB619 – CB19). Feb 2019.
  2. Huang Y.T., Shiao M.S., Tasi C.A.,  Lan K.Y., Lin C.H., Jinawath N.*, Chang J.M.*, Identification of Alternative Splicing Characteristic Associated with Clear-Cell Ovarian Cancer from Paired Normal and Tumor Tissues. 11th International Conference on Machine Learning and Computing. Zhuhai, China, Feb 2019. https://ieeexplore.ieee.org/document/8949316
  3. Gwayi SD, Pithukpakorn M, Suriyaphol P, Boonyapisit W, Suktitipat B.Identification of Novel Genetic Variants Associated With Sudden Unexpected Death among Thai Population. Proceeding of Graduate Research Forum 2019, 16th and 23rd May 2019, Faculty of Medicine Siriraj Hospital, Bangkok. May 2019.
  4. Yimwadsana B., Serey V., Sanghlao S. Performance Analysis of an AoA-based Wi-Fi Indoor Positioning System., Proceedings of the 19th International Symposium on Communications and Information Technologies (ISCIT 2019)., Ho Chi Minh City., Vietnam., 25-27 September 2019. Sep 2019.
  5. Narupiyakul L.*, Weerawat W., Train Approach Information Platform and Service System, Urban Rail Transit: Proceedings of the 6th Thailand Rail Academic Symposium. Lecture Notes in Mobility, Springer, Singapore. Sep 2019.
  6. Sirilertworakul, N., Yimwadsana, B.*, A Graph-Based Approach to Topic Clustering of Tourist Attraction Reviews, Proceedings of the 25th International Conference on Information and Software Technologies (ICIST 2019), Vilnius, Lithuania, 10-12 October 2019, pp. 343-354. Oct 2019.
  7. Jenkitkonchai J, Marriott P, Yang W, Sriden N, Jung J, Wigge PA, Charoensawan V.*, Flowering time regulatory network controlled by FLOWERING LOCUS C (FLC) in response to temperature changes. Proceeding at the 31st Annual Meeting of the Thai Society for Biotechnology and International Conference. Phuket. Nov 2019.

 

3. Invited/Selected talks at Conferences

  1. Chaoroensawan V., Less is more? Systems Biology of Gene Expression Regulation at Single-Cell Resolution. The 21st National Genetics Conference, The Zign Hotel, Cholburi, Thailand. June 2019.
  2. Suktitipat B., Lessons from Implementation of Bioinformatics Solution for the University Hospital. The 21st National Genetics Conference, The Zign Hotel, Cholburi, Thailand. June 2019.
  3. Chaoroensawan V., Precision Medicine in Thais. Precision Medicine in Thailand 4.0, Pullman Bangkok King Power Hotel, Thailand. Aug 2019.
  4. Chaoroensawan V., Systems biology of gene expression regulation: from genome-scale to single-cell transcriptomics. Healthcare Challenges in the Disruptive Era, Prince of Songkla University, Thailand. Aug 2019.
  5. Chaoroensawan V. Systems Biology of Gene Expression Regulation: FROM genome-wide to single-cell resolutions. Invited speaker at the 27th Conference of the Federation of Asian and Oceanian Biochemists and Molecular Biologists (FAOBMB) and 44th Annual Conference of the Malaysian Society for Biochemistry and Molecular Biology (MSBMB) will be held in Kuala Lumpur, Malaysia from 19 – 22 August 2019.
  6. Jinawath N.Session: Genomics, Proteomics, Metabolomics; Princess Chulabhorn International Oncology Conference 2019 on “New Frontiers in Cancer Combat”, Centara Grand Convention Center, Bangkok, Thailand. Aug 8, 2019.
  7. Chaoroensawan VSetting up single-cell genomics research with limited resources: a lesson from Thailand. Human Cell Atlas Equity Meeting in Addis Ababa, Ethiopia on October 31, 2019.
  8. Jinawath N.The effect of FFPET’s preanalytical factors on nucleic acid quality: a Thailand multi-center study., The 59th International Academy of Pathology (IAP)-Thailand Annual Meeting 2019, Nov 2019.
  9. Chaoroensawan V Single cell analysis: New tool in precision medicine การประชุมวิชาการสรีรวิทยาสมาคม ครั้งที่ 47. Research Innovation and Precision Medicine Challenging Role for Physiologists. 19 – 20 ธันวาคม 2562 @ โรงแรมเดอะสุโกศล กรุงเทพ

 

4. Conference abstracts/posters

  1. Tanramluk D.Narupiyakul L.Charoensawan V., Pakotiprapha D., Akavipat R., MANORAA: An Augmented Intelligent Drug Design Platform., Pure and Applied Chemistry International Conference (PACCON 2019), Bangkok, Thailand. Feb 2019.
  2. Kongkittimanon K., Suktitipat B., Daikoku: a Somatic Mutation Database for Thailand’s Cancer Precision Medicine. National Genetics Conference., The Zign Hotel, Pattaya, Cholburi, Thailand. (Poster C-8 Presentation), June 2019.
  3. Taoma K., Suktitipat B., Genetic Risk Prediction Platform in Non-Communicable Diseases. National Genetics Conference., The Zign Hotel, Pattaya, Cholburi, Thailand. (Poster C-7 Presentation), June 2019.
  4. กิตติศักดิ์ ท้าวมา, ภูมิ สุขธิติพัฒน์., ระบบรองรับการทำนายความเสี่ยงทางพันธุกรรมในโรคไม่ติดต่อที่สำคัญ. รายงายงานสืบเนื่องจากการประชุมวิชาการพันธุศาสตร์แห่่งชาติ ครั้งที่ 21, วันที่ 20–22 มิถุนายน 2562, โรงแรมเดอะซายน์ พัทยา จ. ชลบุรี., June 2019.
  5. Jinawath N., Poonpanichakul T., Shiao M.-S., Jiravejchakul N., Matangkasombut P., Sirachainan E., Charoensawan V*. Capturing tumor heterogeneity in pre- and post-chemotherapy colorectal cancer ascites using scRNA-Seq. American Society of Human Genetics Annual Meeting 2019, Houston, Texas, USA, Oct 2019.

 

5. Intellectual properties

  1. อภิรักษ์ หุ่นหล่อ สหภูมิ ศรีสุมะ วโรดม เจริญสวรรค์ Mahidol Snake Envenomation Support System (MSESS) ระบบช่วยตัดสินใจทางคลินิกเพื่อการดูแลรักษาผู้ป่วยถูกงูกัด MSESS (pending copyright)

 

6. Academic services

  1. Charoensawan V.Systems Biology of Gene Expression Regulation at Single-Cell Resolution. TRF-OHEC meeting 2019, Cha-am, Thailand, Jan 2019.
  2. ICBS ColloquiumLimpanuparb T.Modeling living systems from macroscopic and molecular approaches: Specific case studies of chemical morphogenesis and non-bonded interactions, Feb 2019.
  3. ICBS Colloquium, Khoomrung S.Metabolomics and Systems Biology for the Development of Human Vaccines, Apr 2019.
  4. Charoensawan V., สร้าง “แผนที่ชีวโมเลกุล” แก้ปัญหาพืชยุคโลกร้อน บทสัมภาษณ์ทาง Manager online https://mgronline.com/science/detail/9620000039169?fbclid=IwAR2CxZm1Jfnghhrr0BddDx91KPy4EPkYEMN-asVJ-py6X9fX9CMVeD9XavA , Apr 2019.
  5. Jinawath N.,  งานแถลงข่าวธนาคารชีวภาพเพื่อโรคมะเร็งแบบครบวงจร คณะแพทยศาสตร์ รพ.รามาธิบดี ต่อยอดงานวิจัยสู่การวินิจฉัยรักษาโรคมะเร็ง (https://www.bangkokbiznews.com/news/detail/834979) Ramathibodi Comprehensive Tumor Biobank, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, May 13, 2019.
  6. ICBS ColloquiumMorarach K.Current Trends and Best Practice in scRNAseq Experiments and Analysis, Nov 2019.
  7. วโรดม เจริญสวรรค์ วิทยากรบรรยายพิเศษ หน่วยอณูเวชศาสตร์ คณะแพทยศาสตร์ศิรราชพยาบาล “Single-cell Transcriptimics: current concepts and technologies” 20 Nov 2019.
  8. Jinawath N.งานแถลงข่าวความร่วมมือด้านธนาคารชีวภาพเพื่อโรคมะเร็งแบบครบวงจรระหว่างสถาบันมะเร็งแห่งชาติ และคณะแพทยศาสตร์ รพ.รามาธิบดี ม.มหิดล – Dec 4, 2019. https://www.matichon.co.th/local/quality-life/news_1786369